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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30626523_30627569_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30626523 - 30627569
Intron Length:
1047

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGAGCC
5'SS Class:
major
3'SS Sequence:
CTGTCTTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTCCTGTCTT
Flanking Amino Acid:
RIEASIERIKVSKASADLML
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
63.2
36.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
77.6
0.62
0.8
72.8
32
Minor 5ss
24.9
-2.9
3.3
32.9
42.4
Minor BPS
43.4
-0.4
3.6
80.68
41.2

Associated Gene:

Gene:
GNG12
Ensembl Gene ID:
ENSAPLG00000022574
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020115
30626397 - 30627665
1269