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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30633403_30637547_R

Intron Information:

Intron Rank:
153675
Intron Class:
major
Intron Phase:
Intron Coordinates:
30633403 - 30637547
Intron Length:
4145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGGGTCGG
5'SS Class:
major
3'SS Sequence:
TTCTCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
CTTTCCTGCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
50.9
47.3
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
85.8
0.81
0.8
84.1
30.9
Minor 5ss
27.3
-2.6
3
32
42.4
Minor BPS
64.8
0.55
2
84.75
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030166
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029978
30632967 - 30638033
5067