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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30661768_30662069_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30661768 - 30662069
Intron Length:
302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGGCAG
U12 Branch Point Sequence:
GTTTCCTCTCTT
Flanking Amino Acid:
FCLFIFDMCERGVQLKNPFY
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
73.7
33.1
Major BPS
37.4
-0.7
1.7
42.8
49.4
Major PPT
80.7
0.69
0.7
75.7
26.3
Minor 5ss
33.6
-1.9
3
41.1
45.4
Minor BPS
40.5
-0.6
3.6
73.05
43.8

Associated Gene:

Gene:
WLS
Ensembl Gene ID:
ENSAPLG00000014906
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015568
30657106 - 30675356
18251