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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30662168_30662363_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
30662168 - 30662363
Intron Length:
196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGGGTGTG
5'SS Class:
major
3'SS Sequence:
ACCCTTCGATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
ACCTCCTGACCC
Flanking Amino Acid:
WIIFCGEHMMDQNERNRLSG
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
64.9
41.1
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
59.4
0.21
1
59
36.4
Minor 5ss
29.6
-2.3
3.4
35.9
42.5
Minor BPS
52.7
0.06
1.8
61.28
44

Associated Gene:

Gene:
WLS
Ensembl Gene ID:
ENSAPLG00000014906
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015568
30657106 - 30675356
18251