Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30662533_30662929_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30662533 - 30662929

Intron Length:

397

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTGAGTGGG

5'SS Class:

major

3'SS Sequence:

TCTCCCTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATAGAT

U12 Branch Point Sequence:

AAACTGGAAATA

Flanking Amino Acid:

LMTRAPVLLEKVIFALGISM

Intron Amino Acid Position:

235

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

40.1

Major BPS

62.6

0.31

58.7

38.1

Major PPT

82.7

0.73

0.7

76.9

Minor 5ss

28.4

-2.5

3.1

31.4

36.6

Minor BPS

33.6

-1.2

2.4

40.3

33.4

Associated Gene:

Gene:

WLS

Ensembl Gene ID:

ENSAPLG00000014906

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015568

30657106 - 30675356

18251