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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3068540_3071798_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3068540 - 3071798
Intron Length:
3259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTATGATTT
5'SS Class:
major
3'SS Sequence:
TTTCTTGAATAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
CTTTCTTGAATA
Flanking Amino Acid:
CITDVVYNHTATNSEWLRMH
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
74.6
36.3
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
62.7
0.29
1.2
69.4
40
Minor 5ss
51.7
0.06
2.8
74.3
41.9
Minor BPS
69.3
0.6
1.4
75.76
36

Associated Gene:

Gene:
AGL
Ensembl Gene ID:
ENSAPLG00000013474
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014147
3064049 - 3095087
31039