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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30719204_30720203_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30719204 - 30720203
Intron Length:
1000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGTGG
5'SS Class:
major
3'SS Sequence:
TGTTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTGTAT
U12 Branch Point Sequence:
ATTTCTGTAGGA
Flanking Amino Acid:
DYRCTLPVKLILSRLLDGSR
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
63.1
43.7
Major BPS
62.7
0.32
1.4
63.4
44
Major PPT
89.6
0.89
0.7
84.7
30.1
Minor 5ss
36.3
-1.6
3.3
43.6
46
Minor BPS
46
-0.3
2.4
65.1
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015331
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015999
30712387 - 30725353
12967