About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30722169_30722787_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30722169 - 30722787
Intron Length:
619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGATA
5'SS Class:
strong_major
3'SS Sequence:
GTTGTTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAG
U12 Branch Point Sequence:
TGTTTGTTGTTT
Flanking Amino Acid:
GCYGSESYVMCGRSFSPNFL
Intron Amino Acid Position:
508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
80.5
33.7
Major BPS
59.6
0.24
1.5
57.3
41.7
Major PPT
81.8
0.72
0.8
77.2
37.1
Minor 5ss
36
-1.6
3.3
45.4
43.9
Minor BPS
38.9
-0.7
3.7
70.56
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015331
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015999
30712387 - 30725353
12967