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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30723492_30725153_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30723492 - 30725153
Intron Length:
1662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGTTTTTTAATC
Flanking Amino Acid:
GIILPQNTRKVIAQCLQIIE
Intron Amino Acid Position:
584

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1
74.9
38.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
78.2
0.63
1
78.8
38.7
Minor 5ss
38.1
-1.3
3.1
48.2
47.9
Minor BPS
75.8
0.79
1.1
78.23
31.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015331
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015999
30712387 - 30725353
12967