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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30726286_30726910_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30726286 - 30726910
Intron Length:
625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTACCTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTTTTCTTACCT
Flanking Amino Acid:
PHPDALEEDDGVVLSIVISP
Intron Amino Acid Position:
484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
78.5
35.6
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
70.5
0.46
0.9
63.7
37.8
Minor 5ss
36.6
-1.5
3
52
44.2
Minor BPS
79.4
1
1.5
95.32
31.5

Associated Gene:

Gene:
RPE65
Ensembl Gene ID:
ENSAPLG00000015511
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016193
30726134 - 30731710
5577