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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30727431_30727668_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30727431 - 30727668
Intron Length:
238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTGCA
5'SS Class:
major
3'SS Sequence:
TTGCTTGTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TTCTCTTGGATA
Flanking Amino Acid:
RYVLPLNIDKADTGKNLVTL
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.2
66.1
39.9
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
76.3
0.59
0.9
68.7
42
Minor 5ss
37.4
-1.4
3.3
50.7
45.6
Minor BPS
61
0.34
1.4
70.37
36.2

Associated Gene:

Gene:
RPE65
Ensembl Gene ID:
ENSAPLG00000015511
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016193
30726134 - 30731710
5577