About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30727799_30728159_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30727799 - 30728159
Intron Length:
361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
GCTGTCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CCTCACTTACAA
Flanking Amino Acid:
FLIVDLCTWKGFEFVYNYLY
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68.5
38.7
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
71.3
0.48
1
65
41.2
Minor 5ss
26.2
-2.7
2.9
22.7
37.4
Minor BPS
46.1
-0.3
1.9
54.85
43.5

Associated Gene:

Gene:
RPE65
Ensembl Gene ID:
ENSAPLG00000015511
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016193
30726134 - 30731710
5577