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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30728520_30728851_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30728520 - 30728851
Intron Length:
332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGTGT
5'SS Class:
major
3'SS Sequence:
TGTTTCCAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TGTTTCCAAACA
Flanking Amino Acid:
SDRFKPSYVHSFGLTPNYIV
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.2
70.4
42.5
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
71.5
0.48
1
67.2
38.3
Minor 5ss
44
-0.7
3.3
65
46.2
Minor BPS
54.8
0.15
2
72.44
39.4

Associated Gene:

Gene:
RPE65
Ensembl Gene ID:
ENSAPLG00000015511
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016193
30726134 - 30731710
5577