About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3072875_3073052_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3072875 - 3073052
Intron Length:
178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTAT
5'SS Class:
major
3'SS Sequence:
TCTTCTTGCTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATTATTTCAATT
Flanking Amino Acid:
NIALATFIPHSNGPGAIEEC
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
68.7
38.6
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
68.8
0.42
1.1
74.7
33.9
Minor 5ss
37.4
-1.4
3.5
55.6
48.6
Minor BPS
58.2
0.34
1.5
74.78
36.3

Associated Gene:

Gene:
AGL
Ensembl Gene ID:
ENSAPLG00000013474
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014147
3064049 - 3095087
31039