Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30729987_30730502_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30729987 - 30730502

Intron Length:

516

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGGGAA

5'SS Class:

strong_major

3'SS Sequence:

CCACCCTCTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCCTTAC

U12 Branch Point Sequence:

CGTGCCTTACCC

Flanking Amino Acid:

FKEGHVTYHRRFVRTDAYVR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

69.4

37.1

Major BPS

51.2

0.03

1.2

45.3

39.5

Major PPT

71.3

0.48

0.8

61.4

34.7

Minor 5ss

27.5

-2.6

3.6

37.2

47.4

Minor BPS

58.6

0.25

1.8

66.71

45.1

Associated Gene:

Gene:

RPE65

Ensembl Gene ID:

ENSAPLG00000015511

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016193

30726134 - 30731710

5577