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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30731174_30731699_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30731174 - 30731699
Intron Length:
526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
CTGACCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
CTCTCCTGACCC
Flanking Amino Acid:
MYSQVEHPAGGYK
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
75.4
34.4
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
73.2
0.52
0.9
65.7
35.8
Minor 5ss
37
-1.5
2.9
51.4
39.2
Minor BPS
56.5
0.18
1.8
66.78
44.8

Associated Gene:

Gene:
RPE65
Ensembl Gene ID:
ENSAPLG00000015511
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016193
30726134 - 30731710
5577