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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3073344_3073871_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
3073344 - 3073871
Intron Length:
528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCGTTT
5'SS Class:
weak_major
3'SS Sequence:
GTTAATTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TATTTGTTAATT
Flanking Amino Acid:
PISRKYPLVTRYFTYPFKDM
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.2
72.1
39.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
68.2
0.41
0.9
61.8
39.6
Minor 5ss
65.1
0.51
2.7
81.8
38.5
Minor BPS
65.9
0.58
2
84.43
36.6

Associated Gene:

Gene:
AGL
Ensembl Gene ID:
ENSAPLG00000013474
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014147
3064049 - 3095087
31039