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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30741128_30741737_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30741128 - 30741737
Intron Length:
610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGACGG
5'SS Class:
major
3'SS Sequence:
AATTAACTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTACAATTAACT
Flanking Amino Acid:
THSCMLTGTQNLLQPHLERI
Intron Amino Acid Position:
588

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.64
1
60.1
44.8
Major BPS
77.3
0.68
1
81.5
27
Major PPT
68
0.41
1
60.4
40.5
Minor 5ss
33.1
-1.9
3.1
39.8
39.8
Minor BPS
61.4
0.44
1.8
81.43
38.9

Associated Gene:

Gene:
DEPDC1
Ensembl Gene ID:
ENSAPLG00000002417
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002470
30737417 - 30748342
10926