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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30747904_30748297_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30747904 - 30748297
Intron Length:
394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGATG
5'SS Class:
major
3'SS Sequence:
CCCTTCCCATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTTTCTTCACCC
Flanking Amino Acid:
RPGPYRATRLWNEITRYFRA
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
0.9
71.3
40.1
Major BPS
77.5
0.68
1
79.6
33
Major PPT
71.8
0.49
0.8
70.3
29.2
Minor 5ss
30.6
-2.2
3.2
36.5
41.9
Minor BPS
63.3
0.4
1.8
78.34
37.6

Associated Gene:

Gene:
DEPDC1
Ensembl Gene ID:
ENSAPLG00000002417
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020308
30737417 - 30748342
10926
ENSAPLT00000002470
30737417 - 30748342
10926