Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30757186_30762808_F

Intron Information:

Intron Rank:

126132

Intron Class:

major

Intron Phase:

Intron Coordinates:

30757186 - 30762808

Intron Length:

5623

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTCCTT

5'SS Class:

major

3'SS Sequence:

CTTGCTTTAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

CTTGCTTTAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.5

0.48

1.1

65.7

45.6

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

77.3

0.61

0.9

72.9

36.2

Minor 5ss

42.8

-0.8

3.4

65.6

45.5

Minor BPS

74.5

0.77

1.4

78.6

38.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017953

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041221

30757041 - 30764004

6964