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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3077791_3078367_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3077791 - 3078367
Intron Length:
577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTAACCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TATTTTTTAACC
Flanking Amino Acid:
ITHDNECPIQHRSAYDALPS
Intron Amino Acid Position:
633

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
86.9
30.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
76.7
0.6
0.9
71.4
38.6
Minor 5ss
39.9
-1.1
3.1
56.9
47.4
Minor BPS
80.7
0.94
1
82.95
29.9

Associated Gene:

Gene:
AGL
Ensembl Gene ID:
ENSAPLG00000013474
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014147
3064049 - 3095087
31039