About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30782187_30785182_F

Intron Information:

Intron Rank:
145221
Intron Class:
major
Intron Phase:
Intron Coordinates:
30782187 - 30785182
Intron Length:
2996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTTTG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCCTTTTTACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1.1
78.8
38.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
83.2
0.75
0.7
76.3
32.3
Minor 5ss
49.4
-0
2.5
66.9
44.4
Minor BPS
58.4
0.26
1.6
65.59
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028307
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022207
30781465 - 30786141
4677