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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3079130_3080084_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3079130 - 3080084
Intron Length:
955

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCAGA
5'SS Class:
major
3'SS Sequence:
TAACTTTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
CATAATTTAACT
Flanking Amino Acid:
SKEVPEMCIPGKIEEVVLEA
Intron Amino Acid Position:
768

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.8
41.1
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
73.5
0.53
0.9
68.8
36.6
Minor 5ss
38.8
-1.3
2.8
49.6
46.2
Minor BPS
62
0.46
1.6
74.92
41.5

Associated Gene:

Gene:
AGL
Ensembl Gene ID:
ENSAPLG00000013474
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014147
3064049 - 3095087
31039