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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3080210_3080317_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3080210 - 3080317
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTCTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TTCTCTTCTAAG
Flanking Amino Acid:
FTVELREHIQIKDSKIIKQA
Intron Amino Acid Position:
810

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
78.1
36.6
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
77.6
0.62
0.9
82.9
26
Minor 5ss
36.1
-1.6
2.7
46.4
41.8
Minor BPS
46.6
-0.4
2
56.59
44.7

Associated Gene:

Gene:
AGL
Ensembl Gene ID:
ENSAPLG00000013474
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014147
3064049 - 3095087
31039