About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3080431_3080555_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3080431 - 3080555
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTTAT
5'SS Class:
strong_major
3'SS Sequence:
ATTCATATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
ATTCCTATAAAT
Flanking Amino Acid:
NLTPGSVIVFRVSLDPKAQE
Intron Amino Acid Position:
847

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
84.2
29.7
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
78.5
0.64
0.9
74.7
39
Minor 5ss
40.8
-1
3.1
57.9
46.7
Minor BPS
58.5
0.34
1.7
78.57
36.8

Associated Gene:

Gene:
AGL
Ensembl Gene ID:
ENSAPLG00000013474
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014147
3064049 - 3095087
31039