Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3080691_3081210_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3080691 - 3081210

Intron Length:

520

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTC|GTAAGTATT

5'SS Class:

major

3'SS Sequence:

ATCTTTATTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TCATCTTTATTT

Flanking Amino Acid:

SAPILKTLFSSIASKLSLAD

Intron Amino Acid Position:

892

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.3

0.6

1.3

83.5

Major BPS

100

1.24

0.5

100

Major PPT

84.1

0.77

0.8

81.9

33.8

Minor 5ss

43.2

-0.7

2.9

61.1

37.5

Minor BPS

64.2

0.52

1.6

76.15

41.3

Associated Gene:

Gene:

AGL

Ensembl Gene ID:

ENSAPLG00000013474

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014147

3064049 - 3095087

31039