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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3083994_3085206_F

Intron Information:

Intron Rank:
22
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
3083994 - 3085206
Intron Length:
1213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGCTTG
5'SS Class:
weak_major
3'SS Sequence:
TTTTGAATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTATTTTGAATT
Flanking Amino Acid:
LLDVGWHQMSSFVQNGSTFV
Intron Amino Acid Position:
1026

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.4
41.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
81.2
0.7
0.9
74.2
39.4
Minor 5ss
62.5
0.42
2.3
72.7
44.5
Minor BPS
67.3
0.62
1.3
81.06
34.6

Associated Gene:

Gene:
AGL
Ensembl Gene ID:
ENSAPLG00000013474
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014147
3064049 - 3095087
31039