About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3087329_3088612_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3087329 - 3088612
Intron Length:
1284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTGTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
ATTAACTTAATC
Flanking Amino Acid:
MLVTGRYLEARNIILAFGGT
Intron Amino Acid Position:
1119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
78
0.63
0.9
70.2
40.7
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
67.7
0.53
1.5
74.93
35.1

Associated Gene:

Gene:
AGL
Ensembl Gene ID:
ENSAPLG00000013474
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014147
3064049 - 3095087
31039