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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_3089908_3091544_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3089908 - 3091544
Intron Length:
1637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAAAAT
5'SS Class:
major
3'SS Sequence:
ATTATCATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
AATTTTTGGACT
Flanking Amino Acid:
ARNRGIPATPRDGSAVEIVG
Intron Amino Acid Position:
1277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
74.2
36
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
74.8
0.56
0.9
71.8
38.5
Minor 5ss
33.4
-1.9
3.3
48.6
47.1
Minor BPS
59.1
0.37
1.4
74.27
36.3

Associated Gene:

Gene:
AGL
Ensembl Gene ID:
ENSAPLG00000013474
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014147
3064049 - 3095087
31039