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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30899641_30904975_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30899641 - 30904975
Intron Length:
5335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCCGT
5'SS Class:
major
3'SS Sequence:
TTTTATGTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATGAAAC
Flanking Amino Acid:
*MPIKLKSYPSNCSTVKLYA
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
65.5
45.9
Major BPS
100
1.24
0.5
100
0
Major PPT
85.9
0.81
0.9
80.1
37.1
Minor 5ss
39.7
-1.2
3.1
57.3
46.7
Minor BPS
62.4
0.37
1.8
78.5
36

Associated Gene:

Gene:
LRRC7
Ensembl Gene ID:
ENSAPLG00000009688
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024744
30875712 - 30991143
115432
ENSAPLT00000010116
30875712 - 30988441
112730
ENSAPLT00000043149
30875712 - 30991143
115432