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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30906074_30906806_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30906074 - 30906806
Intron Length:
733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
AACTGTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
AAGCTTCTAACT
Flanking Amino Acid:
LLKPVSIQYLSCQMALHNF*
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
84.1
26.4
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
73
0.52
0.9
69.9
40.6
Minor 5ss
36.6
-1.5
2.9
46.1
36.1
Minor BPS
49.7
0.06
1.6
65.39
38.9

Associated Gene:

Gene:
LRRC7
Ensembl Gene ID:
ENSAPLG00000009688
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043149
30875712 - 30991143
115432
ENSAPLT00000024744
30875712 - 30991143
115432
ENSAPLT00000010116
30875712 - 30988441
112730