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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30906897_30909446_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30906897 - 30909446
Intron Length:
2550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
ATTATGTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTTTCTATTATG
Flanking Amino Acid:
FWSFFLLTLEDLSN*EFWS*
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
70.7
0.47
0.9
62.3
43.6
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
53.4
-0
2
68.08
39.7

Associated Gene:

Gene:
LRRC7
Ensembl Gene ID:
ENSAPLG00000009688
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043149
30875712 - 30991143
115432
ENSAPLT00000024744
30875712 - 30991143
115432
ENSAPLT00000010116
30875712 - 30988441
112730