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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30932544_30934087_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30932544 - 30934087
Intron Length:
1544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATCTAT
U12 Branch Point Sequence:
CTGTCCATAATA
Flanking Amino Acid:
LIWAIMNSLSCLRFSNKYKI
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
66
0.4
1.3
64.8
42.4
Major PPT
88.4
0.86
0.6
88.2
21.6
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
64.8
0.46
1.6
71.99
40.5

Associated Gene:

Gene:
LRRC7
Ensembl Gene ID:
ENSAPLG00000009688
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043149
30875712 - 30991143
115432
ENSAPLT00000024744
30875712 - 30991143
115432
ENSAPLT00000010116
30875712 - 30988441
112730