About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30934163_30937148_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
30934163 - 30937148
Intron Length:
2986

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATGAAAT
5'SS Class:
major
3'SS Sequence:
ACATGCTATTAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTCAA
U12 Branch Point Sequence:
CACTTTGTAACA
Flanking Amino Acid:
WTIIPCKYYLGL*GS*NSSC
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
73.4
37.3
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
55.4
0.12
1.2
57.5
42
Minor 5ss
40.8
-1
2.9
49.3
46.7
Minor BPS
49
-0
2
58.95
41.6

Associated Gene:

Gene:
LRRC7
Ensembl Gene ID:
ENSAPLG00000009688
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024744
30875712 - 30991143
115432
ENSAPLT00000010116
30875712 - 30988441
112730
ENSAPLT00000043149
30875712 - 30991143
115432