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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30937294_30937678_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30937294 - 30937678
Intron Length:
385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTCTATTACT
Flanking Amino Acid:
ICCSNCQTP*DC*KG*QL*K
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.8
83.3
27.9
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
84.4
0.77
0.7
80.5
31.5
Minor 5ss
30.7
-2.2
2.9
41.1
44.9
Minor BPS
65.4
0.57
1.9
89.21
35

Associated Gene:

Gene:
LRRC7
Ensembl Gene ID:
ENSAPLG00000009688
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024744
30875712 - 30991143
115432
ENSAPLT00000010116
30875712 - 30988441
112730
ENSAPLT00000043149
30875712 - 30991143
115432