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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30937752_30942632_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30937752 - 30942632
Intron Length:
4881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTACAATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
ACTACATTTACA
Flanking Amino Acid:
SLQFCQMQLEIYLY*KNLTA
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.8
86
23.7
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
79
0.65
0.9
75.2
38.5
Minor 5ss
35.6
-1.6
2.8
42.6
38.4
Minor BPS
49.9
-0
2
63.85
41.7

Associated Gene:

Gene:
LRRC7
Ensembl Gene ID:
ENSAPLG00000009688
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024744
30875712 - 30991143
115432
ENSAPLT00000010116
30875712 - 30988441
112730
ENSAPLT00000043149
30875712 - 30991143
115432