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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30953863_30967698_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30953863 - 30967698
Intron Length:
13836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTATTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTACAT
U12 Branch Point Sequence:
TTTACTCTACAT
Flanking Amino Acid:
RKRRKMQGKLRMPLDILPVR
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
70.2
0.5
1.1
77.2
36
Major PPT
79.3
0.66
0.9
77.5
36.5
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
48.4
-0
2
74.71
41.8

Associated Gene:

Gene:
LRRC7
Ensembl Gene ID:
ENSAPLG00000009688
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043149
30875712 - 30991143
115432