Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30959303_30967698_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30959303 - 30967698

Intron Length:

8396

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATGTAA

5'SS Class:

strong_major

3'SS Sequence:

TTGTATTCCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTACAT

U12 Branch Point Sequence:

TTTACTCTACAT

Flanking Amino Acid:

GPWHQRRFQWRMPLDILPVR

Intron Amino Acid Position:

549

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

73.8

32.7

Major BPS

70.2

0.5

1.1

77.2

Major PPT

79.3

0.66

0.9

77.5

36.5

Minor 5ss

36.1

-1.6

3.2

46.7

48.6

Minor BPS

48.4

-0

74.71

41.8

Associated Gene:

Gene:

LRRC7

Ensembl Gene ID:

ENSAPLG00000009688

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024744

30875712 - 30991143

115432

ENSAPLT00000010116

30875712 - 30988441

112730