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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30967811_30968041_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30967811 - 30968041
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTAACT
5'SS Class:
major
3'SS Sequence:
TGTTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
ACCTCCTGAAAA
Flanking Amino Acid:
SLFFWVKRRKSRQMSLKQIR
Intron Amino Acid Position:
587

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.1
71.2
38.7
Major BPS
69.6
0.49
1
59.5
39
Major PPT
86.5
0.82
0.9
84.6
36
Minor 5ss
35.1
-1.7
3.2
50.8
45.1
Minor BPS
58.6
0.27
1.6
64.02
42

Associated Gene:

Gene:
LRRC7
Ensembl Gene ID:
ENSAPLG00000009688
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024744
30875712 - 30991143
115432
ENSAPLT00000010116
30875712 - 30988441
112730
ENSAPLT00000043149
30875712 - 30991143
115432