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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30985802_30988333_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30985802 - 30988333
Intron Length:
2532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTGATTTTATCT
Flanking Amino Acid:
ACSSLATRSSRQMDTVLYIW
Intron Amino Acid Position:
1376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
66.1
45.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.3
0.66
1
72.9
42.2
Minor 5ss
40.5
-1.1
3.3
55.3
48.9
Minor BPS
59
0.36
1.6
75.72
41.5

Associated Gene:

Gene:
LRRC7
Ensembl Gene ID:
ENSAPLG00000009688
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024744
30875712 - 30991143
115432
ENSAPLT00000010116
30875712 - 30988441
112730
ENSAPLT00000043149
30875712 - 30991143
115432