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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30997032_30998161_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30997032 - 30998161
Intron Length:
1130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
CCTTCATAAAAT
Flanking Amino Acid:
PPELGNCENLRTLLLEGNPF
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
82.2
30
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
85.8
0.81
0.8
80.4
31.6
Minor 5ss
39
-1.2
2.7
51.8
44.8
Minor BPS
49.5
0.04
2.1
70.06
46.5

Associated Gene:

Gene:
LRRC40
Ensembl Gene ID:
ENSAPLG00000009971
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010419
30996926 - 31018244
21319