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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30998348_30999090_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30998348 - 30999090
Intron Length:
743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTACTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CTGACTTTAATT
Flanking Amino Acid:
TLQVINLSFNRFKVFPGVLY
Intron Amino Acid Position:
506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
77.5
32.9
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
75.1
0.56
1
76.5
31
Minor 5ss
34.2
-1.8
2.9
42.1
45
Minor BPS
68.2
0.65
1.3
75.99
41.5

Associated Gene:

Gene:
LRRC40
Ensembl Gene ID:
ENSAPLG00000009971
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010419
30996926 - 31018244
21319