Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_30999169_31000403_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30999169 - 31000403

Intron Length:

1235

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTTGTGAC

5'SS Class:

major

3'SS Sequence:

GTTTGATACACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTGAT

U12 Branch Point Sequence:

CTTCGTTTGATA

Flanking Amino Acid:

MLHKLTHLDIRNNFLTSLPE

Intron Amino Acid Position:

480

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.4

0.6

1.2

69.6

34.9

Major BPS

78.6

0.71

1.2

71.4

45.1

Major PPT

68.8

0.42

42.8

Minor 5ss

35.4

-1.7

43.7

44.1

Minor BPS

49.9

-0

1.8

62.88

38.1

Associated Gene:

Gene:

LRRC40

Ensembl Gene ID:

ENSAPLG00000009971

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010419

30996926 - 31018244

21319