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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31002214_31003139_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31002214 - 31003139
Intron Length:
926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTGTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGAACAT
U12 Branch Point Sequence:
GTTTGTGTAACT
Flanking Amino Acid:
AITSLKLLEYSEKQAAVIPD
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.6
94.3
17.7
Major BPS
55.8
0.15
1.3
63.4
42.8
Major PPT
85.5
0.8
0.9
84.6
36
Minor 5ss
38.6
-1.3
3.4
57.8
46.8
Minor BPS
53.2
0.18
2.4
80.14
42.2

Associated Gene:

Gene:
LRRC40
Ensembl Gene ID:
ENSAPLG00000009971
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010419
30996926 - 31018244
21319