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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31003249_31005661_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31003249 - 31005661
Intron Length:
2413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTGT
5'SS Class:
major
3'SS Sequence:
GTGCTATCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTGAC
U12 Branch Point Sequence:
GGTTGTGTGACT
Flanking Amino Acid:
LLKYLRSKIQDDGPSPNEEP
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
73.8
37.5
Major BPS
53.6
0.09
1.4
48.8
46.3
Major PPT
72.5
0.51
1
62.7
43.3
Minor 5ss
47.4
-0.3
2.7
67.3
43.8
Minor BPS
46
-0.2
2.4
68.14
43.1

Associated Gene:

Gene:
LRRC40
Ensembl Gene ID:
ENSAPLG00000009971
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010419
30996926 - 31018244
21319