About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31005708_31008148_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31005708 - 31008148
Intron Length:
2441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
ACTTACTGATCT
Flanking Amino Acid:
LRTIRRDLLQKGTQELLKYL
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
75.5
40.6
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
84.9
0.78
0.9
90.5
22.3
Minor 5ss
44.7
-0.6
2.9
58.1
40.6
Minor BPS
51.2
0.11
1.9
72.51
43.9

Associated Gene:

Gene:
LRRC40
Ensembl Gene ID:
ENSAPLG00000009971
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010419
30996926 - 31018244
21319