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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31011438_31012353_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31011438 - 31012353
Intron Length:
916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTAATACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTCCACATTT
Flanking Amino Acid:
QLENLQKLDVSHNKLKSIPE
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
75.3
40.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
72.7
0.51
1
65.2
44.1
Minor 5ss
39.7
-1.2
2.8
49.5
46.5
Minor BPS
53.3
0.18
2.1
81.42
40.3

Associated Gene:

Gene:
LRRC40
Ensembl Gene ID:
ENSAPLG00000009971
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010419
30996926 - 31018244
21319