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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31013119_31013411_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31013119 - 31013411
Intron Length:
293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCGCG
5'SS Class:
major
3'SS Sequence:
TTTGTGCTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAG
U12 Branch Point Sequence:
TTTAGCTGACCC
Flanking Amino Acid:
LNLAGRGLGQVPQHVWRINL
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
56.7
42.7
Major BPS
64.7
0.37
1.5
63.7
43.9
Major PPT
79.3
0.66
0.9
73.9
36.8
Minor 5ss
30.8
-2.2
3.2
30.6
42.7
Minor BPS
48.2
-0.1
2.2
68
43.3

Associated Gene:

Gene:
LRRC40
Ensembl Gene ID:
ENSAPLG00000009971
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010419
30996926 - 31018244
21319