Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31013530_31018214_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

31013530 - 31018214

Intron Length:

4685

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GAT|GCAGCAAGC

5'SS Class:

weak_major

3'SS Sequence:

GCGGCCGGGGCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CGCGGAG

U12 Branch Point Sequence:

GCGGCGCGGAGG

Flanking Amino Acid:

RDACRRPRADPRSGFGRAAE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

56.9

0.16

1.4

41.3

Major BPS

36.2

-0.8

1.5

26.1

36.2

Major PPT

47.8

-0.1

1.1

38.1

39.9

Minor 5ss

30.1

-2.3

4.2

46.9

42.2

Minor BPS

27.9

-1.8

2.1

23.92

36.1

Associated Gene:

Gene:

LRRC40

Ensembl Gene ID:

ENSAPLG00000009971

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010419

30996926 - 31018244

21319