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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_31024911_31026024_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31024911 - 31026024
Intron Length:
1114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ATGCTTTTAACT
Flanking Amino Acid:
GLPGANLNSQSLAADQLLKL
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
74
36.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
85.9
0.81
0.7
81
24.3
Minor 5ss
40.6
-1
2.8
52.4
44.8
Minor BPS
70.1
0.71
1.2
79.17
37

Associated Gene:

Gene:
SRSF11
Ensembl Gene ID:
ENSAPLG00000010241
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010697
31014001 - 31033189
19189
ENSAPLT00000037723
31014001 - 31032119
18119